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Home » Recipes » Cookies and Bars

Gluten Free Apple Pie Cookies

Published: Oct 19, 2022

Note: This site is a participant in the Amazon Associates Program, an affiliate advertising program designed to provide a means for the site to earn fees by linking to Amazon and affiliated sites.

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These tender gluten free apple pie cookies are everything you could want in a fall cookie - fresh apples, tasty spices, and great texture!

A plate of gluten-free apple pie cookies.

Recently, I had the idea to make an apple pie version of my Pecan Pie Cookies.

Neither the Apple Pie Cookies or the original source material were gluten-free, but they looked and smelled fantastic, and they were met with rave reviews from those who received them.

Asking my husband where he ranked them as far as favourite cookies go, he replied:

“Pretty damn high. I mean they were INHALED.”.

I was very jealous for a few hours, until I decided that I could just wander away from my low carb diet for a bit, and make some for myself.

After all, I do have my recipe for Gluten-Free Pecan Pie Cookies - a longtime favourite of mine.

So, I adapted it in the same way I did for the full gluten batch... and had to fight my husband for them, even though he had his wheat version on hand!

Unf. SO good!

I can see these gluten-free apple pie cookies becoming a go-to for fall baking in general, in addition to being fantastic as a dessert table option for Thanksgiving dinner... or added to Christmas cookie platters.

They look impressive, but they’re really easy to make - let me show you how!

A plate of gluten free apple pie cookies.

Ingredients

Don’t be intimidated by the length of the ingredients list in this recipe. If you’re already into gluten free baking, you either already have the flours, etc... or should! (They’re my staples!)

Some notes for you:

The Flour Mix

Since the early days of my gluten free life, I’ve been all about avoiding the pre-mixed “all purpose” gluten free mixes.

I don’t like them, and I really don’t think that you can do a gluten free flour that does *everything* in the way that wheat flour does.

When you customize what flours & supporting ingredients you use - and the proportions you use them in, you CAN come up with an end result that is as good or even BETTER than the wheat flour version, though.

Premixed flour blends don’t allow for that flexibility, though.

Anyway, in this recipe I use:

Sorghum Flour
Light Buckwheat Flour
Brown Rice Flour
Coconut Flour
Tapioca Starch / Tapioca Flour
Xanthan Gum

This combination makes for a tender cookie with a lovely flavour, the perfect compliment to the topping.

In addition, I use some Cornstarch in the filling.

Apples

I like to use tart or sweet-tart apples when making this, as I do add a fair amount of sugar to create the sauce/binder around it.

I tend to use Mutsus, as they’re my absolute favourite apple ever. Granny Smith apples are another good choice.

Butter

I use unsalted butter in this recipe, and have not tried it with any form of butter substitute.

That said, there’s a good chance that a dairy free butter substitute would work well - I just can’t guarantee it.

If you try, let me know how it goes!

Milk

You CAN use whatever kind of milk you like. I tend to use unsweetened almond milk when making these cookies.

Everything Else

Rounding out this recipe, you will need:

Light Brown Sugar
Large egg
Pure Vanilla Extract
Ground Cinnamon
Ground Nutmeg
Baking powder
Salt

... I just don’t have anything to add, for any of these ingredients!

A plate of gluten-free apple pie cookies.

How to Make Gluten-Free Apple Pie Cookies

The full recipe is in the recipe card at the end of this post, here is a pictorial walk through of the techniques.

Cookie Dough

Cream butter and sugar until light and fluffy.

Add egg, milk, and vanilla, continue beating until egg is fully incorporated and mixture is once again smooth and fluffy.

A 5 part image showing the sugar and butter being creamed, and the rest of the wet ingredients being beaten in.

In a large bowl, mix together flours, xanthan gum, baking powder, and salt.

A 2 part image showing the dry ingredients being mixed together.

Slowly add this dry mix to the mixer bowl, and carefully mix until well incorporated and smooth.

A 5 part image showing the dry ingredients being added to the wet and mixed into a gluten free cookie dough.

Wrap dough in plastic film, chill for 1 hour.

Apple Pie Filling

Peel and finely dice the apples. I like small pieces, about ¼" cubes (roughly).

A 5 part image showing the apples being chopped into tiny pieces.

In a medium pot, melt the butter over medium heat.

Add the chopped apple to the pot, cook until it starts releasing the juice, about 4-5 minutes.

As the apples are cooking, combine brown sugar, cornstarch, cinnamon, nutmeg, and salt in a small bowl.

Add dry mixture to the apples, toss to coat.

Simmer for a 5-10 more minutes, until the juice cooks off and starts to form a thick glaze.

An 8 part image showing the apple filling being cooked in a pan.

Remove from heat, stir in vanilla, and allow to cool to room temperature.

Cookie Assembly

Preheat oven to 350 degrees. Line 2 cookie sheets with parchment paper.

Roll cookie dough into balls that are about 1.25″ in diameter, and place them on cookie sheets – leave about 2″ between the cookies.

Gently use thumb to press down in the middle of each cookie, making an indentation. Roll thumb slightly to stretch the indentation out a little.

A 5 part image showing the gluten free cookie dough being rolled into balls and formed into thumbprint cookies.

Fill each indentation with about 1 teaspoon of apple pie filling

A 2 part image showing the apple filling being spooned onto the cookies.

Bake for 12-14 minutes, until lightly browned.

A 2 part image showing pans of baked cookies.

Allow to cool on sheets for 5 minutes or so, before gently transferring to a rack to fully cool.

A plate of gluten free apple pie cookies.

More Gluten Free Cookie Recipes!

Looking for even more recipes for fantastic gluten free cookies that *everyone* will love? Look no further!

Gluten-Free Candy Cane Cookies
Gluten Free Carrot Cake Cookies
Gluten-Free Chewy Banana Oatmeal Cookies
Gluten Free Chewy Chocolate Cookies
Gluten-Free Chocolate Chip Cookies
Gluten Free Do-Si-Dos
Gluten-Free Fig Newtons
Gluten Free Fruitcake Cookies
Gluten-Free Gingerbread Cookies
Gluten Free Ginger Molasses Cookies
Gluten-Free Graham Crackers
Gluten Free Imperial Cookies
Gluten Free Jacques Torres Style Chocolate Chip Cookies
Gluten-Free Oatmeal Butterscotch Cardamom Cookies
Gluten Free Peanut Butter Cookies
Gluten-Free Pecan Pie Cookies
Gluten Free Red Velvet Cookies
Gluten-Free Sandwich Cookies
Gluten Free Shortbread Cookies
Gluten-Free Snickerdoodles
Gluten Free Sugar Cookies (Rolled Sugar Cookies)
Gluten-Free Unicorn Poop Cookies

... and there’s even more - be sure to check out our Gluten-Free Cookies and Bars recipe section!

Sugar Free Cookie Recipes

Looking for options that are both sugar free AND gluten free? Check out these options on my low carb blog, Low Carb Hoser:

Keto Apple Pie Cookies
Low Carb Biscotti
Keto Candy Cane Cookies
Low Carb Chocolate Peanut Butter Cookies
Keto Chocolate Chip Cookies
Low Carb Chocolate Protein Cookies
Keto Gingerbread Cookies
Low Carb Ladyfingers
Keto Lemon Cookies
Low Carb Peanut Butter Chocolate Chip Cookies
Keto Peanut Butter Pecan Chocolate Chip Cookies
Low Carb Pecan Pie Cookies
Keto Pumpkin Spice Cookies
Low Carb Rolled Sugar Cookies
Keto Snickerdoodles
Low Carb Soft Peanut Butter Cookies
Sugar Free Royal Icing
Low Carb Triple Chocolate Cookies

A plate of gluten-free apple pie cookies.

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Finally, if you love this recipe, please consider leaving a star rating and a comment!

A plate of gluten-free apple pie cookies.

A plate of gluten-free apple pie cookies.
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5 from 1 vote

Gluten Free Apple Pie Cookies

These tender gluten free apple pie cookies are everything you could want in a fall cookie - fresh apples, tasty spices, and great texture!
Prep Time20 minutes mins
Cook Time14 minutes mins
Chill time1 hour hr
Total Time1 hour hr 34 minutes mins
Course: Dessert, Snack
Cuisine: American
Diet: Gluten Free
Servings: 24 Cookies
Calories: 162kcal

Equipment

  • 2 Baking Sheets
  • Parchment Paper

Ingredients

Cookie Dough:

  • ¾ cup Butter softened
  • 1 cup Light brown sugar packed
  • 1 Large egg
  • 1 tablespoon Milk
  • 1 teaspoon Vanilla
  • 1 cup Sorghum flour
  • ½ cup Light buckwheat flour
  • ¼ cup Brown rice flour
  • ¼ cup Coconut flour
  • ¼ cup Tapioca Starch/Flour
  • 2 teaspoon Xanthan gum
  • 1 teaspoon Baking powder
  • ½ teaspoon Salt

Filling

  • 2 Large apple
  • 1 tablespoon Unsalted butter
  • ½ Cup Light Brown Sugar Firmly packed
  • 1 teaspoon Cornstarch
  • ½ teaspoon Ground cinnamon
  • ¼ teaspoon Nutmeg
  • Pinch Salt
  • 1 teaspoon Vanilla Extract

Instructions

Cookie Dough:

  • Cream butter and sugar until light and fluffy.
  • Add egg, milk, and vanilla, continue beating until egg is fully incorporated and mixture is once again smooth and fluffy.
  • In a large bowl, mix together flours, xanthan gum, baking powder, and salt.
  • Slowly add this dry mix to the mixer bowl, and carefully mix until well incorporated and smooth.
  • Wrap dough in plastic film, chill for 1 hour.

Filling:

  • Peel and finely dice the apples. I like small pieces, about ¼" cubes (roughly).
  • In a medium pot, melt the butter over medium heat.
  • Add the chopped apple to the pot, cook until it starts releasing the juice, about 4-5 minutes.
  • As the apples are cooking, combine brown sugar, cornstarch, cinnamon, nutmeg, and salt in a small bowl.
  • Add dry mixture to the apples, toss to coat.
  • Simmer for a 5-10 more minutes, until the juice cooks off and starts to form a thick glaze.
  • Remove from heat, stir in vanilla, and allow to cool to room temperature.

Cookie Assembly:

  • Preheat oven to 350 degrees. Line 2 cookie sheets with parchment paper.
  • Roll cookie dough into balls that are about 1.25″ in diameter, and place them on cookie sheets – leave about 2″ between the cookies.
  • Gently use thumb to press down in the middle of each cookie, making an indentation. Roll thumb slightly to stretch the indentation out a little.
  • Fill each indentation with about 1 teaspoon of apple pie filling
  • Bake for 12-14 minutes, until lightly browned.
  • Allow to cool on sheets for 5 minutes or so, before gently transferring to a rack to fully cool.

Nutrition

Calories: 162kcal | Carbohydrates: 25g | Protein: 1g | Fat: 7g | Saturated Fat: 4g | Polyunsaturated Fat: 0.4g | Monounsaturated Fat: 2g | Trans Fat: 0.3g | Cholesterol: 23mg | Sodium: 129mg | Potassium: 76mg | Fiber: 2g | Sugar: 15g | Vitamin A: 211IU | Vitamin C: 1mg | Calcium: 28mg | Iron: 1mg

A plate of gluten free apple pie cookies.

A plate of gluten free apple pie cookies.

Related posts:

A plate of 4 maple syrup caramel apples, 2 of which are dipped in chopped pecans. Maple Caramel Apples A slice of lattice top gluten-free apple pie on a plate, in front of the rest of the pie. Gluten Free Apple Pie A plate of huge gluten free chocolate chip cookies sprinkled with sea salt. Jacques Torres Chocolate Chip Cookies A close up view of a lattice topped pie, made with a gluten free pie crust. Gluten Free Pie Crust

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Marie Porter


Author of the "Beyond Flour" series of gluten-free cookbooks, autistic polymath, and cat mom.

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